HBV Target gene Detail Information

> ARHGEF12 Gene Search Result


Gene Information
Gene Name ARHGEF12
Gene ID 23365
Gene Full Name Rho guanine nucleotide exchange factor 12
Gene Alias LARG|PRO2792
Transcripts ENSG00000196914
Virus HBV
Gene Type protein-coding
HPA Location Info Plasma membrane, Cytosol;Nucleoplasm;
Membrane Info Cancer-related genes, Disease related genes, Predicted intracellular proteins
Uniport_ID Q9NZN5
HGNC ID HGNC:14193
OMIM ID 604763
Summary Rho GTPases play a fundamental role in numerous cellular processes that are initiated by extracellular stimuli working through G protein-coupled receptors. The encoded protein may form a complex with G proteins and stimulate Rho-dependent signals. This protein has been observed to form a myeloid/lymphoid fusion partner in acute myeloid leukemia. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2014]
Target gene [ARHGEF12] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1001919 chr11 46 256 116 418 View
1001920 chr11 46 256 116 418 View
1005672 chr11 37 12 0 49 View
1008830 chr11 18 1 0 19 View
1015933 chr11 2 0 0 2 View
1022730 chr11 37 12 0 49 View

Target gene [ARHGEF12] related to Omics data
Data ID Experiment type Sample number Platform
GSE252863 scRNA-seq 10 Illumina HiSeq 2500 (Homo sapiens)
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - ARHGEF12 peak across samples

Peak Plot

> Dataset: GSE68402 - ARHGEF12 peak across samples

Peak Plot

> Dataset: GSE270130 - ARHGEF12 peak across samples

Peak Plot

> Dataset: GSE131257 - ARHGEF12 peak across samples

Peak Plot