HBV Target gene Detail Information

> CSDE1 Gene Search Result


Gene Information
Gene Name CSDE1
Gene ID 7812
Gene Full Name cold shock domain containing E1
Gene Alias D1S155E|UNR
Transcripts ENSG00000009307
Virus HBV
Gene Type protein-coding
HPA Location Info Cytosol;Golgi apparatus, Plasma membrane;
Membrane Info Cancer-related genes, Plasma proteins, Predicted intracellular proteins
Uniport_ID O75534
HGNC ID HGNC:29905
OMIM ID 191510
Summary Enables RISC complex binding activity; RNA stem-loop binding activity; and lncRNA binding activity. Involved in IRES-dependent viral translational initiation; regulation of gene expression; and stress granule assembly. Located in Golgi apparatus; cytosol; and plasma membrane. Part of CRD-mediated mRNA stability complex and mCRD-mediated mRNA stability complex. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [CSDE1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1038952 chr1 441 39 4 484 View
1038953 chr1 406 35 3 444 View
1038954 chr1 381 33 3 417 View
1038955 chr1 370 32 2 404 View
1038956 chr1 338 29 2 369 View
1038957 chr1 330 29 2 361 View
1038958 chr1 286 25 1 312 View
1038959 chr1 266 25 1 292 View
1038960 chr1 217 22 1 240 View

Target gene [CSDE1] related to Omics data
Data ID Experiment type Sample number Platform
GSE252863 scRNA-seq 10 Illumina HiSeq 2500 (Homo sapiens)
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
GSE199850 scRNA-seq 1 HiSeq X Ten (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - CSDE1 peak across samples

Peak Plot

> Dataset: GSE68402 - CSDE1 peak across samples

Peak Plot

> Dataset: GSE270130 - CSDE1 peak across samples

Peak Plot

> Dataset: GSE131257 - CSDE1 peak across samples

Peak Plot