Gene Name	FOXA1
Gene ID	3169
Gene Full Name	forkhead box A1
Gene Alias	HNF3A|TCF3A
Transcripts	ENSG00000129514
Virus	HPV
Gene Type	protein-coding
HPA Location Info	Nucleoplasm;Nucleoli fibrillar center;
Membrane Info	Cancer-related genes, Predicted intracellular proteins, Transcription factors
Uniport_ID	P55317
HGNC ID	HGNC:5021
OMIM ID	602294
Summary	This gene encodes a member of the forkhead class of DNA-binding proteins. These hepatocyte nuclear factors are transcriptional activators for liver-specific transcripts such as albumin and transthyretin, and they also interact with chromatin. Similar family members in mice have roles in the regulation of metabolism and in the differentiation of the pancreas and liver. [provided by RefSeq, Jul 2008]

Mutation Table: if previous studies reported that target gene was related to virus gene/region/protein, the information in this literature was listed in this section

ID	PMID	Mutation	Gene/Protein/Region	Encoding Gene/Protein	Disease	Description	Detail
1	29695285	T7172C	LCR		Papillomavirus Infections	G R S L T	View
2	28767682	A7168G	LCR		Uterine Cervical Neoplasms	G R S L T	View
3	28767682	A7174C	LCR		Uterine Cervical Neoplasms	G R S L T	View
4	28767682	A7175C	LCR		Uterine Cervical Neoplasms	G R S L T	View
5	28767682	C7270T	LCR		Uterine Cervical Neoplasms	G R S L T	View
6	28767682	G7193T	LCR		Uterine Cervical Neoplasms	G R S L T	View
7	28767682	T7176G	LCR		Uterine Cervical Neoplasms	G R S L T	View
8	28767682	T7177C	LCR		Uterine Cervical Neoplasms	G R S L T	View

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5007022	chr14	177	117	35	329	View

Data ID	Experiment type	Sample number	Platform
C   GSE183048	Chip-seq	24	Illumina HiSeq 4000 (Homo sapiens)
GSE40774	Expression array	134	Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Probe Name version)
GSE169622	Methylation profiling (Array)	9	Infinium MethylationEPIC
GSE65858	Expression array	270	Illumina HumanHT-12 V4.0 expression beadchip
GSE181805	Expression array	25	[HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215	RNA-seq	8	Illumina NovaSeq 6000 (Homo sapiens)
GSE164690	scRNA-seq	51	Illumina NextSeq 500 (Homo sapiens)
GSE138080	Expression array	35	Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662	Expression array	8	[HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542	Expression array	36	Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C   GSE143026	ATAC-seq;Chip-seq;RNA-seq	30	Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC	DNA methylation sequencing;RNA-seq	288	TCGA
GSE51993	Expression array	48	Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip
GSE55550	Expression array	155	Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
GSE165883	RNA-seq	20	Illumina NextSeq 500 (Homo sapiens)

• Genome binding/occupancy profiling

When the gene can detect a peak in the dataset, a peak plot will be displayed.

> Dataset: GSE183048 - FOXA1 peak across samples

Peak Plot

> Dataset: GSE143026 - FOXA1 peak across samples

Peak Plot