HPV Target gene Detail Information

> FXYD6-FXYD2 Gene Search Result


Gene Information
Gene Name FXYD6-FXYD2
Gene ID 100533181
Gene Full Name FXYD6-FXYD2 readthrough
Gene Alias FXYD6
Transcripts ENSG00000255245
Virus HPV
Gene Type protein-coding
HPA Location Info Nuclear membrane, Vesicles;
Membrane Info Predicted membrane proteins
HGNC ID HGNC:39978
Summary This locus represents naturally occurring read-through transcription between the neighboring FXYD domain-containing ion transport regulator 6 (GeneID 53826) and sodium/potassium-transporting ATPase subunit gamma (GeneID 486) genes on chromosome 11. One read-through transcript produces a fusion protein that shares sequence identity with each individual gene product, while another read-through transcript encodes a protein that has a distinct C-terminus and only shares sequence identity with the upstream locus (GeneID 53826). [provided by RefSeq, Aug 2011]
Target gene [FXYD6-FXYD2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5011514 chr11 1 1 0 2 View

Target gene [FXYD6-FXYD2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048
Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026
ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - FXYD6-FXYD2 peak across samples

Peak Plot


> Dataset: GSE143026 - FXYD6-FXYD2 peak across samples

Peak Plot