HTLV1 Target gene Detail Information

> HMSD Gene Search Result


Gene Information
Gene Name HMSD
Gene ID 284293
Gene Full Name histocompatibility minor serpin domain containing
Gene Alias ACC-6|ACC6|C18orf53|HSMD-v
Transcripts ENSG00000221887
Virus HTLV1
Gene Type protein-coding
HPA Location Info Secreted to blood;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID A8MTL9, P0C7T4
HGNC ID HGNC:23037
OMIM ID 612086
Summary This gene encodes a serpin-domain containing protein that may function as a serine protease inhibitor. This gene is primarily expressed in cells of myeloid lineage. A polymorphism in this gene may result in the expression a splice variant that encodes a minor histocompatibility antigen. [provided by RefSeq, Oct 2010]
Target gene [HMSD] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6015616 chr18 8 5 1 14 View

Target gene [HMSD] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - HMSD peak across samples

Peak Plot