HTLV1 Target gene Detail Information

> KCNC4 Gene Search Result


Gene Information
Gene Name KCNC4
Gene ID 3749
Gene Full Name potassium voltage-gated channel subfamily C member 4
Gene Alias C1orf30|HKSHIIIC|KSHIIIC|KV3.4
Transcripts ENSG00000116396
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoli, Cytosol;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins, Voltage-gated ion channels
Uniport_ID Q03721
HGNC ID HGNC:6236
OMIM ID 176265
Summary The Shaker gene family of Drosophila encodes components of voltage-gated potassium channels and is comprised of four subfamilies. Based on sequence similarity, this gene is similar to the Shaw subfamily. The protein encoded by this gene belongs to the delayed rectifier class of channel proteins and is an integral membrane protein that mediates the voltage-dependent potassium ion permeability of excitable membranes. It generates atypical voltage-dependent transient current that may be important for neuronal excitability. Multiple transcript variants have been found for this gene. [provided by RefSeq, Jul 2010]
Target gene [KCNC4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004408 chr1 41 53 23 117 View
6015542 chr1 8 5 1 14 View
6019340 chr1 6 2 0 8 View

Target gene [KCNC4] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - KCNC4 peak across samples

Peak Plot