HBV Target gene Detail Information

> KCNIP1 Gene Search Result


Gene Information
Gene Name KCNIP1
Gene ID 30820
Gene Full Name potassium voltage-gated channel interacting protein 1
Gene Alias KCHIP1|VABP
Transcripts ENSG00000182132
Virus HBV
Gene Type protein-coding
HPA Location Info Vesicles;
Membrane Info Predicted intracellular proteins, Transporters
Uniport_ID Q9NZI2
HGNC ID HGNC:15521
OMIM ID 604660
Summary This gene encodes a member of the family of cytosolic voltage-gated potassium (Kv) channel-interacting proteins (KCNIPs), which belong to the neuronal calcium sensor (NCS) family of the calcium binding EF-hand proteins. They associate with Kv4 alpha subunits to form native Kv4 channel complexes. The encoded protein may regulate rapidly inactivating (A-type) currents, and hence neuronal membrane excitability, in response to changes in the concentration of intracellular calcium. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2013]
Target gene [KCNIP1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1012628 chr5 6 0 0 6 View
1020468 chr5 28 5 0 33 View
1043119 chr5 6 1 0 7 View

Target gene [KCNIP1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - KCNIP1 peak across samples

Peak Plot

> Dataset: GSE68402 - KCNIP1 peak across samples

Peak Plot

> Dataset: GSE100400 - KCNIP1 peak across samples

Peak Plot

> Dataset: GSE131257 - KCNIP1 peak across samples

Peak Plot