HBV Target gene Detail Information

> VWA3B Gene Search Result


Gene Information
Gene Name VWA3B
Gene ID 200403
Gene Full Name von Willebrand factor A domain containing 3B
Gene Alias SCAR22
Transcripts ENSG00000168658
Virus HBV
Gene Type protein-coding
HPA Location Info Nucleoplasm, Cytosol;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q502W6
HGNC ID HGNC:28385
OMIM ID 614884
Summary This gene encodes an intracellular protein that contains a von Willebrand factor type A domain. Intracellular proteins with VWA domains are thought to function in transcription, DNA repair, ribosomal and membrane transport and the proteasome. Mutations in this gene are associated with Spinocerebellar ataxia, autosomal recessive 22. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, May 2017]
Target gene [VWA3B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1011507 chr2 3 4 2 9 View
1012394 chr2 2 0 5 7 View
1013541 chr2 1 2 2 5 View
1016241 chr2 1 0 0 1 View
1016354 chr2 1 0 0 1 View
1016355 chr2 1 0 0 1 View
1016379 chr2 1 0 0 1 View
1016423 chr2 1 0 0 1 View
1021200 chr2 1 0 0 1 View
1042511 chr2 45 6 1 52 View
1042512 chr2 1 0 0 1 View

Target gene [VWA3B] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
GSE100400 Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - VWA3B peak across samples

Peak Plot

> Dataset: GSE68402 - VWA3B peak across samples

Peak Plot

> Dataset: GSE270130 - VWA3B peak across samples

Peak Plot

> Dataset: GSE131257 - VWA3B peak across samples

Peak Plot