Detail information
ID ENOM00009
Accession GSE148759
Status Public on Oct 27, 2020
Title Effect of needling treatments on GB20 acupoint in EAE model mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary
Purpose: We used RNA sequencing to investigate the effect of needling treatments on GB20 acupoint in EAE model mice Methods: Retinal mRNA profiles of 13-week-old female sham control mice (SHAM), EAE model mice with MOG injection (MOG), EAE model mice with needling treatment at acupoint GB20 (GB20) and its control acupoint GV16 (GV16) were generated by deep sequencing, in triplicate, using Illumina Hiseq platform. The sequence reads that passed quality filters were analyzed with DESeq2 R package to identify differently expressed genes with padj<0.05. Results: RNA-seq identified total 234 DEGs, with 100 genes upregulated and 134 genes downregulated, comparing MOG group with SHAM group.Further analysis revealed that, among the MOG injection induced 100 up-regulated DEGs, 24 DEGs were reversed and significantly down-regulated by GB20 treatment, while 14 were reversed and significantly down-regulated by GV16 treatment. However, 12 of the 14 reversed DEGs of GV16 treatment were already included in the 24 DEGs of GB20. The left 2 DEGs specific to GV16 treatment were Gfap (glial fibrillary acidic protein) and Fgf2 (fibroblast growth factor 2). As to the MOG injection induced 134 down-regulated DEGs, 12 DEGs were reversed and significantly up-regulated by GB20 treatment, while only 3 DEGs were reversed and significantly up-regulated by GV16 control treatment, and all the 3 DEGs were included in the 12 DEGs of GB20 treatment. Conclusions: Our research first reported that needling treatment on GB20 had regulation effects on retinal transcriptome of EAE model mice, indicating potential way of therapy for treatment of optic neuritis.
Samples
GSM ID Sample info Characteristics Description
GSM4478412 SHAM_1 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: sham control sham control
GSM4478413 SHAM_2 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: sham control sham control
GSM4478414 SHAM_3 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: sham control sham control
GSM4478415 MOG_1 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG35-55 peptide immunization MOG35-55 peptide immunization
GSM4478416 MOG_2 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG35-55 peptide immunization MOG35-55 peptide immunization
GSM4478417 MOG_3 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG35-55 peptide immunization MOG35-55 peptide immunization
GSM4478418 GB20_1 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG immunization with GB20 treatment MOG immunization with GB20 treatment
GSM4478419 GB20_2 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG immunization with GB20 treatment MOG immunization with GB20 treatment
GSM4478420 GB20_3 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG immunization with GB20 treatment MOG immunization with GB20 treatment
GSM4478421 GV16_1 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG immunization with GV16 treatment MOG immunization with GV16 treatment
GSM4478422 GV16_2 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG immunization with GV16 treatment MOG immunization with GV16 treatment
GSM4478423 GV16_3 strain: C57BL/6 tissue: retina age: 13 weeks genotype: wild type protocol: MOG immunization with GV16 treatment MOG immunization with GV16 treatment
Platform GPL24247: Illumina NovaSeq 6000 (Mus musculus)
Indicator
Ecel1, Oas2, Cxcl10, Tnnt2, Ppp1r1c, Oxtr, Egr4, Scn4b, Nr4a3, Isl2, Pou4f1, Gfap, Fgf2, Folh1, Sncg, Uchl1, Tppp3, Slc5a8
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