SARS-CoV-2-ralated Dataset Summary

This module is dedicated to providing researchers with comprehensive and detailed virus-related omics data from the public databases. The current version brings together virus related transcriptome, epigenome and genome data. The experiment types include: Expression profiling by high throughput sequencing/array, Methylation profiling by high throughput sequencing/array/genome tiling array, Genome binding/occupancy profiling by genome tiling array and Genome variation profiling by high throughput sequencing, etc.
The following labels indicate that this dataset has analysis data/figure/literature.
X
 xCell analysis  
E
 Differential expression analysis  
M
 Differential methylation analysis  
C
 Genome binding/occupancy profiling analysis  
S
 scRNA analysis  
L
 Literature  


Dataset Summary
Accession Virus Title Experiment Type Platform ID Samples Data Availability Detail
GSE152641 Dengue fever virus (DENV);Ebola virus;Influenza Virus (IV);Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptomic Similarities and Differences in Host Response between SARS-CoV-2 and Other Viral Infection RNA-seq GPL24676 86
X
E
L
 Detail
GSE153218 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Bulk RNA sequencing of SARS-CoV-2 infected alveolar type I- and type II like cells RNA-seq GPL18573 16
X
E
L
 Detail
GSE162323 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) SARS-CoV-2 utilizes a multipronged strategy to suppress host protein synthesis RNA-seq GPL24676
GPL29320 		42
X
E
 Detail
GSE163623 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Distinct mechanisms for TMPRSS2 expression explain organ-specific inhibition of SARS-CoV-2 infection by enzalutamide [ChIP-Seq] Chip-seq GPL24676 5
C
L
 Detail
GSE163959 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptome analysis of Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)-infected and Influenza A/H1N1-infected nasal turbinate and lung tissues RNA-seq GPL18573 48
X
E
L
 Detail
GSE164485 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) The landscape of human brain immune response in patients with severe COVID-19 scRNA-seq GPL16791 36
S
L
 Detail
GSE166253 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptomic characteristics and impaired immune function of patients who retest positive for SARS-CoV-2 RNA RNA-seq GPL20795 26
X
E
 Detail
GSE167075 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) m6A modification in SARS-CoV-2 virus regulates host cell innate immune response MeRIP-seq
RNA-seq 		GPL29320
GPL29742 		16
X
E
L
 Detail
GSE190680 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Immune transcriptome analysis of COVID-19 patients infected with SARS-CoV-2 variants carrying the E484K escape mutation identifies a distinct gene module RNA-seq GPL24676 100
X
E
L
 Detail
GSE199816 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptional Differences Between COVID-19 and Sepsis RNA-seq GPL28038 27
X
E
L
 Detail
GSE206147 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Single-cell RNA sequencing analysis of a COVID-19– associated maculopapular rash in a patient with psoriasis treated with ustekinumab scRNA-seq GPL24676 1
S
L
 Detail
GSE207923 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Timecourse of SARS-CoV-2 Infection with New York & Washington Isolates RNA-seq GPL24676 27
X
E
L
 Detail
GSE211934 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Pathological effects of SARS-CoV-2 and α-synuclein preformed fibril in hESC-derived dopaminergic neurons RNA-seq GPL24676 8
X
E
L
 Detail
GSE215262 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transcriptional patterns of peripheral blood mononuclear cells (PBMCs) in SARS-CoV-2 infected patients with different severity and outcome RNA-seq GPL24676 25
X
E
L
 Detail
GSE240694 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Long-term effects of Omicron BA.2 breakthrough infection on immunity-metabolism balance: a 6-month prospective study scRNA-seq GPL24676 9
S
L
 Detail
GSE283771 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Effects of SARS-CoV-2 S protein on endothelial cell thrombosis RNA-seq GPL11154 6
X
E
 Detail

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